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Uploading Spatial 10x data into seurat

score 230 · Answer 1 · 2023-10-18 21:00:16

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Uploading Spatial 10x data into seurat

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Error in sparseMatrix(i = x[["indices"]][] + 1, p = x[["indptr"]][], x = x[["data"]][], : 'dims' must contain all (i,j) pairs

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RunUMAP code error after merged spatial transcriptomic objects

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invalid class “LogMap” object: Rownames must be supplied When trying to create a Seurat object

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score 1645 · Answer 10 · 2023-11-15 10:57:43

Invalid class "Graph" object: superclass "mMatrix" not defined (Seurat/R)

1.6k views Asked by MarieSN At 15 November 2023 at 10:57

TechQA.

List Question

Uploading Spatial 10x data into seurat

Convert character string and data frame into another data frame

Error in sparseMatrix(i = x[["indices"]][] + 1, p = x[["indptr"]][], x = x[["data"]][], : 'dims' must contain all (i,j) pairs

Load h5mu data from python in R to create a seurat object?

RunUMAP code error after merged spatial transcriptomic objects

Visualizing 3 features simultaneously in Seurat/single cell RNA sequencing

invalid class “LogMap” object: Rownames must be supplied When trying to create a Seurat object

Issue with CellCycleScoring in Seurat Saying 'Rowmeans' subscript is out of bounds

How do I change the theme on an array of graphs using VlnPLot in Seurat (in R)?

Invalid class "Graph" object: superclass "mMatrix" not defined (Seurat/R)

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