I tried to reproduce This example in Rstudio, It is working very well. Then I just put everything together to download the template in shiny ! but it does not work :
library(shiny)
library(ReporteRs)
library(ReporteRsjars)
library( ggplot2 )
library( magrittr )
library( ggplot2 )
library( magrittr )
ui<-  fluidPage(    
  downloadButton('downloadData', 'Download')
)
server<- function(input, output,session) {
  output$downloadData <- downloadHandler(
    filename = "file.docx",
    content = function(file) {
      target_file <- "bookmark_example.docx" # file to produce 
      template <- system.file(package = "ReporteRs", 
                              "templates/bookmark_example.docx" ) # template example
      doc = docx(template=template)
      ft <- vanilla.table( data = head(iris), add.rownames=TRUE )
      myplot1 <- ggplot(data = iris, aes(Sepal.Length, Petal.Length, color = Species), 
                        alpha = I(0.7) )
      doc %>%
        addParagraph( value = "Jane Doe", stylename = "small", bookmark = "AUTHOR" ) %>%
        addParagraph( value = "John Doe", stylename = "small", bookmark = "REVIEWER" ) %>%
        addFlexTable( flextable = ft, bookmark = "DATA" ) %>%
        addPlot( fun = print, x = myplot1, bookmark = "PLOT" ) %>%
        writeDoc( file = target_file)
    }
  )
}
shinyApp(ui=ui,server=server)
if I run the server content, without putting in shiny, It would update my template but in shiny when I click on download button, it returns :
Any idea where is the mistake ???

                        
Please check this line and adapt:
Why? The function DownloadHandler takes two main arguments:
1) filename - the name the file will get (evaluated only at the beginning, so put it inside a reactive expression in case it changes by user input).
2) content - takes already care of creating a temporary file for you, hence you need to supply the file argument from your content function.
Otherwise (like in your example) you create a second .docx somewhere inside ShinyApp without pointing it to the content function.