Autodock vina result extraction

Question

I am doing Molecular Docking using Autodock Vina and I am getting the result in a file titled as file.log. Even though it looks like it works fine in terminal since I get affinity and other results, I cannot see them properly in the log file. How can I extract my file in the same format as it in terminal? I will further extract this information in Python. The terminal code was:

vina --receptor receptor.pdbqt --ligand out1.pdbqt --config conf.txt --out file.log

Could anyone please suggest me how I can solve this problem I want to end up with a log file which includes the data has same format with terminal?

Answer 1

Try this:

vina --receptor receptor.pdbqt --ligand out1.pdbqt --config conf.txt > my.log