Measure : ipython timeit vs timeit method

Question

the timeit module timeit() method returns the total time, but ipython %timeit returns much more information f.e.

 In [17]: %timeit sa.sum()                                                                                                                                                    
 560 µs ± 9.74 µs per loop (mean ± std. dev. of 7 runs, 1000 loops each)

is there a standalone %timeit python implementation that you can use in your app ?

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posted the solution in my blog. thanks

Answer 1

I am not aware of anything standalone, but this can be easily extracted out of IPython, most of what it does is in the TimeitResult class which formats the output https://github.com/ipython/ipython/blob/8520f3063ca36655b5febbbd18bf55e59cb2cbb5/IPython/core/magics/execution.py#L55-L104

Then there's the nicer reporting of the compile time, worst run being much worse than the fastest, and getting the run number automatically like timeit's cli.

Reusing the code from IPython and python's timeit, and removing some checks that are probably unnecessary for the common use, we can get a simple function to do the timing in the same way IPython does:

import math
import timeit


def _format_time(timespan, precision=3):
    """Formats the timespan in a human readable form"""
    units = ["s", "ms", "\xb5s", "ns"]
    scaling = [1, 1e3, 1e6, 1e9]
    if timespan > 0.0:
        order = min(-int(math.floor(math.log10(timespan)) // 3), 3)
    else:
        order = 3
    scaled_time = timespan * scaling[order]
    unit = units[order]
    return f"{scaled_time:.{precision}g} {unit}"


class TimeitResult(object):
    """
    Object returned by the timeit magic with info about the run.

    Contains the following attributes :

    loops: (int) number of loops done per measurement
    repeat: (int) number of times the measurement has been repeated
    best: (float) best execution time / number
    all_runs: (list of float) execution time of each run (in s)
    compile_time: (float) time of statement compilation (s)
    """

    def __init__(self, loops, repeat, best, worst, all_runs, compile_time, precision):
        self.loops = loops
        self.repeat = repeat
        self.best = best
        self.worst = worst
        self.all_runs = all_runs
        self.compile_time = compile_time
        self._precision = precision
        self.timings = [dt / self.loops for dt in all_runs]

    @property
    def average(self):
        return math.fsum(self.timings) / len(self.timings)

    @property
    def stdev(self):
        mean = self.average
        return (
            math.fsum([(x - mean) ** 2 for x in self.timings]) / len(self.timings)
        ) ** 0.5

    def __str__(self):
        return "{mean} {pm} {std} per loop (mean {pm} std. dev. of {runs} run{run_plural}, {loops} loop{loop_plural} each)".format(
            pm="+-",
            runs=self.repeat,
            loops=self.loops,
            loop_plural="" if self.loops == 1 else "s",
            run_plural="" if self.repeat == 1 else "s",
            mean=_format_time(self.average, self._precision),
            std=_format_time(self.stdev, self._precision),
        )


def nice_timeit(
    stmt="pass",
    setup="pass",
    number=0,
    repeat=None,
    precision=3,
    timer_func=timeit.default_timer,
    globals=None,
):
    """Time execution of a Python statement or expression."""

    if repeat is None:
        repeat = 7 if timeit.default_repeat < 7 else timeit.default_repeat

    timer = timeit.Timer(stmt, setup, timer=timer_func, globals=globals)

    # Get compile time
    compile_time_start = timer_func()
    compile(timer.src, "<timeit>", "exec")
    total_compile_time = timer_func() - compile_time_start

    # This is used to check if there is a huge difference between the
    # best and worst timings.
    # Issue: https://github.com/ipython/ipython/issues/6471
    if number == 0:
        # determine number so that 0.2 <= total time < 2.0
        for index in range(0, 10):
            number = 10 ** index
            time_number = timer.timeit(number)
            if time_number >= 0.2:
                break

    all_runs = timer.repeat(repeat, number)
    best = min(all_runs) / number
    worst = max(all_runs) / number
    timeit_result = TimeitResult(
        number, repeat, best, worst, all_runs, total_compile_time, precision
    )

    # Check best timing is greater than zero to avoid a
    # ZeroDivisionError.
    # In cases where the slowest timing is lesser than a microsecond
    # we assume that it does not really matter if the fastest
    # timing is 4 times faster than the slowest timing or not.
    if worst > 4 * best and best > 0 and worst > 1e-6:
        print(
            f"The slowest run took {worst / best:.2f} times longer than the "
            f"fastest. This could mean that an intermediate result "
            f"is being cached."
        )

    print(timeit_result)

    if total_compile_time > 0.1:
        print(f"Compiler time: {total_compile_time:.2f} s")
    return timeit_result


nice_timeit("time.sleep(0.3)", "import time")

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