I upgraded sonarqube to 5.2. I replaced the old instance with a new instance, so the old configuration was deleted and replaced.
I have several custom fxcop rules.

When running the analysis, I am getting the following error.
ERROR: Error during Sonar runner execution
ERROR: Unable to execute Sonar
ERROR: Caused by: Unable to find the rule key corresponding to the rule config key "HSI1009" in repository "fxcop".
This is caused by empty entries in the sonar created file fxcop-sonarqube.ruleset file.
Does anyone know if this is a bug or some error on my end? I did not have these sorts of issues before the 5.2 upgrade, but unable to go back due to reliance on some plugins using 5.2.
This problem has been fixed with the SonarQube Scanner for MSBuild v1.0.2+ : https://jira.sonarsource.com/browse/SONARMSBRU-151 Also be sure to run the SQ Scanner for MSBuild in a .NET 4.5.2 context.